4.- How to use data cleaning, EOO estimation and environmental of occurrence ...modestrsoftware
How to use data cleaning, EOO estimation and environmental occurrence features in ModestR.
Describes data cleaning; EOO methods supported in ModestR (convex hull, alpha shape, kernel density); environmental occurrence in ModestR.
15. Locating species occupied river basins with ModestR (Version ModestR 5.3...modestrsoftware
This document provides a 15 step tutorial for using the ModestR software to locate river basins occupied by a species. The steps include: 1) importing occurrence records for a species from the GBIF database, 2) validating the occurrences, 3) displaying the occurrences on a map, 4) searching for river basins containing occurrences, and 5) converting the river basins to defined presence areas for the species on the map. The full tutorial demonstrates how to utilize various ModestR functions to download, clean, analyze, and visualize species occurrence and distribution data.
3.- Integrating environmental data in ModestR (Version ModestR v5.3 or higher) modestrsoftware
This document provides a step-by-step tutorial for integrating and using environmental data in the ModestR software. It describes how to import environmental data in ASCII grid format from sources like the Bio-Oracle dataset. It then demonstrates how to visualize the data on maps in ModestR, clip the data for a specific area, and export the clipped raster files for further use. The tutorial also explains how integrated environmental data can be overlaid on distribution maps and exported in images.
2.- How to create and edit a map using GBIF data (Version ModestR v5.3 or hig...modestrsoftware
This document provides a step-by-step tutorial for creating and editing a species distribution map in ModestR by downloading occurrence data from GBIF. The tutorial walks through selecting a database, choosing a species, downloading its occurrence records from GBIF, editing the map by deleting, relocating, and manually validating occurrences, and saving the edited map to the database.
11.- Calculating species distribution for different periods with ModestR (Ve...modestrsoftware
In this tutorial we’ll describe how to calculate species distribution for different periods. To do that, we’ll use the 3D Niche capability of ModestR, taking time as 3th dimension
20. Calculating most probable distribution of a species with Niche of Occurr...modestrsoftware
In this tutorial we describe how to perform species distribution modelling (SDM) with Niche Of Occurrence (NOO) in ModestR. NOO is a new proposed SDM that offers a very good performance and it's easier to perform and understand than other existing SDM's
17. An example using ModestR to assess species distribution in different cli...modestrsoftware
In this tutorial we describe how to use ModestR to model species distribution in different climatic change scenarios. To do that, we’ll use the 3D Niche capability of ModestR, taking time as 3th dimension.
More Related Content
14.- Adding WorldClim data to ModestR (Version ModestR 5.3 or higher)
1. Step by step tutorial:
Adding WorldClim
environmental data in
ModestR
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
2. What do you need for this tutorial:
1. ModestR v5.3 or higher
2. Internet connection
3. About 10 minutes
ModestR software can be freely downloaded from http://www.ipez.es/ModestR
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
3. In this tutorial we’ll describe how to
integrate environmental data from
WorldClim website. Follow the next
steps!
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
4. Environmental data can be integrated in ModestR and used for several purposes. Not only for visualization, but also for data
exportation, data cleaning or niche calculation. Moreover, ModestR allows working with environmental data in different ways,
for example to generate clipped environmental data for a specific area. More info in Tutorial 3, “Integrating environmental
data in ModestR”
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
5. First, you have to download WorldClim data, from http://www.worldclim.org/ website.
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
6. For example, you can download
bioclimatic variables. ModestR supports
data with a maximum resolution of 1
minute. We recommend using data with
a resolution of 5 minutes.
Data will be downloaded as a single zip.
You don’t need to decompress it!
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
7. Run ModestR MapMaker application. Then go to menu Layers/Manage environmental variables (In ModestRv2.0 this option is
located in the Options menu item. In more recent releases it is found in the Layers menu item).
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
Go to menu
Layers/Manage
environmental
variables
8. An Environmental variables management dialog box will be displayed. Then click on the Add button for the Folders panel.
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
Click on the Add button.
Then enter a name for
the folder. For example
WorldClim.
9. After creating the folder, you can import the datasets. As we said, in this tutorial, we’ll explain how to import a WorldClim zip
file.
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
1. Select the
folder created. 2. Click on the Import
button and several
options will show up. In
this example, we’ll
import Zip Files.
The folder is just
a label or tag that
ModestR will
associate to data
for organization
purposes. It has
no effect on data
neither in its
usage. Assigning
different folder to
different data can
helps you to
identify and find
them more easily.
10. MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
The next step is to select the file that contain environmental data you want to integrate in ModestR. In this case, a zip file
from WorldClim.
After selecting the file you’re interested in,
click on the Open button.
The importing process depends on how
many variables you want to import, and
the size of the files.
11. MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
A WorldClim zip file can contain many rasters. Besides this, they are in GeoTIFF format. As ModestR uses ESRI ASC format, a
conversion process is necessary. Therefore, the importation process can take some time.
12. Once the files are imported, you can see the variables in the tree.
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
13. MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/
Now you can use those data in any of the ModestR applications for a broad range of analyses.
As a first step, you can do to Step by step tutorial 3- Integrating environmental data in ModestR to learn the basics of using
environmental data in ModestR.
14. It was the
Step by Step tutorial:
Adding WorldClim environmental
data in ModestR
Thank you for your interest.
MODESTR QUICK TUTORIALS HTTP://WWW.IPEZ.ES/MODESTR/º
You can find this one and other tutorials in
http://www.ipez.es/ModestR